Scaffold Ga0098038_1023930

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1023930
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2310
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F005415	Metagenome	401	Y
F063764	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10239301	F005415	N/A	LTLEDCQRQLRTWASDLAQREIEKRPEGAKLRQLKELKQKAKDVVMESGTPDSLAIALDQVSKKIGLRWNQDLQALPNFKQ*
Ga0098038_10239302	F000999	AGGA	MTIEYSNDFLEYADKVEEKSDFVVSWFAKKYNKTIFRIGTLNKEGCRTWEQGGKKYMCFWDVVINRYTTCINPMITYKKARN*
Ga0098038_10239303	F063764	GAGG	MAESTKFFRQKKGQWVWIFDVETNRKKKVELQLLLNTINNALRHENRKYFALKEERDEFAKDCRS*