NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1012562

Scaffold Ga0098038_1012562


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1012562 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3293
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001689Metagenome / Metatranscriptome651Y
F004549Metagenome / Metatranscriptome433Y
F023485Metagenome210N
F048277Metagenome148N
F067200Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0098038_10125621F023485AGGAMYTQLPESPVRKVYKCRHCGDVNVKFYNPKHDRAYTAEEWEIIITDGREALEKALRVVSQDPKMFA*
Ga0098038_10125623F048277AGGAGGMFHFWHILAIVGVFVLGIILGRLSMKRKYEAKVEELTNRVAAEKLAKEKEGMEWAARRH*
Ga0098038_10125624F067200N/AMRTQTIMPKFKSYRKFKPEWKYEKKCCNSCSREYLTDNMMGAEEGKFIYVWYCLRCYNLLNNTD*
Ga0098038_10125625F004549AGGAGMNIKKFKSVAVAIDTYKLLKKIASEDDRSAGMQITYLVKKEAKKRKLAA*
Ga0098038_10125626F001689AGGAGMKLKRDYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAKLFMEFALEWSNLANNSGRKFTPPVAHEPEQSAFDFGDVEMQEHYSKLPHKLKETG*

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