Scaffold Ga0098038_1012562

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1012562
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3293
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F004549	Metagenome / Metatranscriptome	433	Y
F023485	Metagenome	210	N
F048277	Metagenome	148	N
F067200	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10125621	F023485	AGGA	MYTQLPESPVRKVYKCRHCGDVNVKFYNPKHDRAYTAEEWEIIITDGREALEKALRVVSQDPKMFA*
Ga0098038_10125623	F048277	AGGAGG	MFHFWHILAIVGVFVLGIILGRLSMKRKYEAKVEELTNRVAAEKLAKEKEGMEWAARRH*
Ga0098038_10125624	F067200	N/A	MRTQTIMPKFKSYRKFKPEWKYEKKCCNSCSREYLTDNMMGAEEGKFIYVWYCLRCYNLLNNTD*
Ga0098038_10125625	F004549	AGGAG	MNIKKFKSVAVAIDTYKLLKKIASEDDRSAGMQITYLVKKEAKKRKLAA*
Ga0098038_10125626	F001689	AGGAG	MKLKRDYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAKLFMEFALEWSNLANNSGRKFTPPVAHEPEQSAFDFGDVEMQEHYSKLPHKLKETG*