Scaffold Ga0098038_1011731

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1011731
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3421
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019754	Metagenome	228	Y
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F023484	Metagenome	210	N
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_101173111	F019754	N/A	MNHNSDDFMIPSELDPTLPWPPSDDDIDAMELDAYDRQKLQALIDHELFMDEMAGVPTAAERNPNLK*
Ga0098038_10117313	F098218	GAGG	MTSFSSWSKRPEEMRAAAKTRAIAALHKKHSKGLTTLERAYLHALKTGRLDLDD*
Ga0098038_10117315	F022313	N/A	MTYHYKPEQEYESTKLERILKELQSIIKRDNKRHMMDQHLTHSMRDLLEYEIIPLLEAEVDYDPTPQTPYDFFHQ*
Ga0098038_10117316	F023484	N/A	MEWLRTNNLITNHFRLMNVNTQSGGFLIASLGRYTSKTEKIIFFKTRAGSLVSSYYVSTFNAIKEGDGLMLSNSCDPDQVIDADQVAKCKTFIRNHS*
Ga0098038_10117317	F020110	N/A	MSTQQEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITASQAEIDLSEDGPSLEESSEPINTNSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYAPTTSSPTTFV*