Scaffold Ga0098038_1011282

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1011282
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3498
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016882	Metagenome / Metatranscriptome	244	Y
F054361	Metagenome	140	Y
F077944	Metagenome	117	Y
F092866	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10112824	F092866	GGA	VGFHKRYIDDEQVIDIYRKYGCQAVIDWYQKGTDAVILSGELSETVHTLLNILAVDKVRGFNRISEVISDASLQKGFDK*
Ga0098038_10112825	F054361	N/A	MGYVNNTAAYDQKRVRKYGKLYGSIDFEVGEISAHYFENNEKPVVGKLHIGGKTFDVTYQELDMIQRTLGTAKDVVNRKYKMGMMR*
Ga0098038_10112827	F077944	N/A	MREEIKKERIKKRVLKDFPNAIVDHDIDGCKIMSGDIFIAEDYYLPSTFDEDKAWEYAALACKTTQNFNRSHPSRMDLSNVENKLNRINNRKRRGRKHVR*
Ga0098038_10112829	F016882	N/A	MAYYVAKVKIATDTPKGVKWQSETYLVDALTVTHAEAQVNEDFKDSGIEFEVKSVAKSQICKVINQNK*