Scaffold Ga0098038_1010931

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1010931
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3555
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F041145	Metagenome	160	N
F059445	Metagenome	134	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10109313	F041145	GGA	LSRPANIKHDNLVTKLEMLVKLCEETEPTPKQLLKMSGEKNADVTDLFTPELIDAKFYLQEVKEQEYDNYSVVDIMKACNNMWRWRLKVKKDGWPDMSSIEYRCGELIRASKKITAIKEYRAYMSNRNKEVSLRQAKDWVDRLSIKMDLDS*
Ga0098038_10109314	F059445	GGAG	MNLNELVDSLIELSCHEMPDEARKSLDDAIDHIVSNMNDNQLKDVLGKTIIDDIESRHPKHVWKEEGDEEEIKALKSLMEGNIAIA*
Ga0098038_10109315	F098210	GGA	LRLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFNFEDDYKVRPRTSIERELDKLSDLNSKEKDNLEQEFQSGLNQLIWDLGMTLPSWDDNKDKEKK*
Ga0098038_10109316	F012123	AGG	MIKRNPCRVKKVKYTANGVETIEERGYAQERKTIDGEEQIFVMEGGDTGIGYWYPKNEVRLVHGGWKNKPKVEPSRKSFWTRAKKV*