Scaffold Ga0098038_1010659

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1010659
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3603
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F092191	Metagenome	107	N
F099992	Metagenome	103	N
F101865	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_101065910	F092191	AGGAGG	MKLKQIVDITKILSDRKVPDDVIKFLDDEYYSVSKKQNIKFGDMDLLHYIRVNIKDHKNLWKSYNEVDDKLHKIRQIMED*
Ga0098038_101065914	F101865	AGGAGG	MKIKDLIKELKYYDEETEFEIKLVVNPHDSKEDVSVNWIGEIDTSLLEQGYIEFGVEKIAEELSKDKHQGRIEI*
Ga0098038_10106593	F002485	N/A	MRNQIDSKSLYYENIGDKTIYYSYNTTVAVKTPIETYVCENVWSITTAKHLNRIEELTGSNREYRMRYKDFRDFCIKNNINKSQFTEI*
Ga0098038_10106594	F099992	GGAGG	MIQVQLNLPLYDNNGKSVKKAHRQLEVELCSKFGGCTTSSGRGKWLDKGKLYNDSLNIYQVAIDKKFKNLFIKIAKKYGIETEQLEIYLVIDGQVKIIKL*