Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1007728 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1007728 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4311
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (95.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4311

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (95.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F012581	Metagenome	279	N
F013187	Metagenome	273	Y
F023319	Metagenome	210	N
F060436	Metagenome	133	N
F064207	Metagenome	129	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100772810	F105336	AGGAG	VKLRQQQITRVEQILSDLERKVEEMEQQDYMTFDLGKDLQNISYMLDVLREELKK*
Ga0098038_100772814	F013187	AGGAG	MPTKAKKKIKKKPKITWGWIYGDECPELWEHFGFPHPDPDDRMKLKFVKYESKEMQSG*
Ga0098038_100772815	F012581	AGGAG	VARFTLYAKKVYYYRKEINARDRKTAEKRGDQYESERLFIPTGEEFYITSIEENEDVNQDN*
Ga0098038_100772816	F008925	AGGAG	MSTKTIKPKIDTVTLNLINKLKAIDDTINEGAWEYVHLGDIIRLQDAFHTTINHFDLKKKGGIGEHGADEGKYTQFWHSDYVCHTDPEAYDPSKVEEDDEYIYICCRGIHL*
Ga0098038_100772819	F023319	GAGG	MSKKIKCQREGCSNEAYPEDMENGASNLLLCDDCYTEIRYLLADYLDIHIQDIKI*
Ga0098038_10077284	F060436	GAGG	MSRYNQINIEHFANLVKDLKINLLTQKEFDNAVEELYMAIFRHNTKGEYVIETMPSDKTNWKVYRPTQTKEEALLIIKGGKHE*
Ga0098038_10077287	F064207	AGGAG	MQFNDREKLILDFLKDNNVDIEEVIDVIIKANGFVGVGLVRLQEIMIDAVKKHFKQESLDKIMNG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1007728

Overview

Ecosystem & Geography

Associated Families

Sequences