Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1006775 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1006775 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4627
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4627

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F027536	Metagenome	194	Y
F029594	Metagenome	188	Y
F052260	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100677510	F018289	GGAGG	MADFTRQQLNTIRKQMQNALNVFADKTDIEIEVGNCSYRGGEATFKVKVLMEGAKTREQQDLEFYAELHKLDLTKIAKLMGEDMSLVGYKARAKKKPYVLQRLRDGAEFVADQNIVEKFYKKEEVNAE*
Ga0098038_100677512	F052260	AGGAGG	MFVILATKPLNDGTKGFRFNFFGKKGIIRQRKLQSNGIKFTKGQCMNAYHFGKTTVYTEKSSNTTTGRKFRHVAG*
Ga0098038_10067753	F027536	GGAGG	MRVSPDGWRYKVIPIDRVINDCKRRADDAWWDGNDDEARLHEQEQKLYELDKEEGILWVPNF*
Ga0098038_10067755	F006217	AGGA	MIEILLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVERLRQFLKDNPHYKYPGMALPNGAIKPLDVCWGSDKTYYIGSDKVKRSKC*
Ga0098038_10067758	F029594	GAGG	MLPDEMEAEKNRKLLLSQADTIEILKRNVRDLQGQLNQAQIRITELKKDEV*
Ga0098038_10067759	F004493	AGAAGG	MQNSVTKNNALDFDDEQWSQLINSNGLLIMWFIEWNKKVEEGKRLQYYQTLQIQDFFKLKYNQSAGCDPWHMKDSKISLDGKFVSEGDDDLEPYFLINTDDGVGYIYPYAFVALPTKSGGHHIVRMD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1006775

Overview

Ecosystem & Geography

Associated Families

Sequences