Scaffold Ga0098038_1005631

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1005631
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5093
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023748	Metagenome	209	Y
F029779	Metagenome	187	Y
F054940	Metagenome	139	Y
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100563110	F095588	AGGAGG	MSFKKYKVELELDFDKRPRKKDILHRLFDVMKEDKVEYKLYKYNNRLYHRV*
Ga0098038_100563113	F023748	AGGAG	MSKEYKYTYRFSEQTVDTRYYKVESNTKLTQAEMQDLAWSVEQTEGETFTCNEGKATFEGTEYGDDAQYQMEEGEEDLADDSI*
Ga0098038_100563115	F029779	N/A	VGIDATERYTHEDILSYVYNLKKIEERFYDSKKT*
Ga0098038_10056315	F054940	GAG	MNLLKQEMKELVKERYYEYLEEGYESFEAMELAKKDIEERAESDIGAFKRLYDSSFDID*