Scaffold Ga0098038_1004989

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1004989
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5435
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10049893	F003020	AGGAG	MPDIANFKSVSVSVDTHEKLRSLAKNRFEVPVSVQKVIEFLLEKEIKKRNGRSNGKSRG*
Ga0098038_10049896	F011410	AGG	MKDLKVKIEWQTSDILVWVVLSIGIGLCIVNFVTIYNIYDVIETMWLEIQQVKETNISLHQFIEEHKDDFN*
Ga0098038_10049897	F000720	GAGG	MTLTKENDKVRRQIPNRMPSATFTLPIDGRRVVGIVNYDVTDTGIIPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLYKNMEDIIMGKQPEKKQRELSTDPYAMKE*
Ga0098038_10049899	F009812	GGAG	MDIVDEFEIEWIPEDTGAPYEVDECFHEVPEHTIDKMCKSKFGHTNWVRMGQMTPADLVGNPCEFDYTNGVIYFKNEILV*