Scaffold Ga0098038_1004942

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1004942
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5468
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019728	Metagenome	228	Y
F024920	Metagenome	204	Y
F033631	Metagenome	177	N
F038854	Metagenome / Metatranscriptome	165	Y
F096218	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10049421	F096218	GGAG	MKNLIIKWLGLEGLIDLRITQLQPGTVDAVIYDLNNRYDLDGMSSKLDDMDYLTQDLESRGNRWDDMADKVEDDSDTFLLDKVQSVDDRLTELVAGYKLDVQLVKEDF*
Ga0098038_100494210	F038854	AGGAGG	MDNPRRIVSATILVEWSDNPKPVVLNNNMPNGLANDFDDWLAEVEQEEVSNAN*
Ga0098038_100494211	F019728	AGGAGG	MLTKKELKKNGWTIVPDGVWFGVDYAESSKVNVLNILTDVLDLDTDVEGYNFVVCAYKKEEVSDV*
Ga0098038_10049426	F024920	AGGAG	MIEELLDKYHEDDFDDLLIQIIKHMQEVKELREWDREQD*
Ga0098038_10049427	F033631	GGAG	MKKYQVKVYNKVDNSYRIAMETPDLDMAENKMERLSNQGHLVKIDLKPNETPEHLKDVPKDKLDTLVEIFKPRL*