NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098038_1004545

Scaffold Ga0098038_1004545


Overview

Basic Information
Taxon OID3300006735 Open in IMG/M
Scaffold IDGa0098038_1004545 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5709
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F030067Metagenome / Metatranscriptome186N
F030293Metagenome / Metatranscriptome186N
F103165Metagenome101N
F105072Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0098038_100454510F030293AGGAGMIVEMLDDRVSIEALGLLPHFFERSLYIEGQSIQSVADKMDDLYHYGGFVYHLDGTIDEKGVYTSAHDDEDILDPIARVNKLGFTLWVYPYAIVGLTDNKGNQKIARFD*
Ga0098038_100454511F103165AGGAGMKTFYMCQITGKYFEDTLIAKTAVRVSDYPSEPSWGIYKTYDGAAILCDCDVDHAKGELNDDS*
Ga0098038_100454514F105072AGGAGGMENITRSKILGRSVILRKRKILSKPFSYNQGECYHNLTGGLWSLYIEHKKGRPVNVSIDDR*
Ga0098038_10045453F001655GGAGGVKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHEHFEASVQRTAKALAESYTYWPDGYVHVQTIINQEYVNIV*
Ga0098038_10045454F002858AGGAGMLIDEKSIYVVDGGDYSIYCLGYTQARTVTNDIMKADPWGGIPFVLRKDLEFSLDDRGNVVMSKSTLDKILFLASDELPKAEGEQ*
Ga0098038_10045459F030067AGGAGMPRESWEIAHDSYYDDLEADHYDGLDDSEAWKEEEQKVIDDLIKRMQGAYNGTL*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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