Scaffold Ga0098038_1003565

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1003565
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6489
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y
F031893	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100356513	F006773	N/A	MSQATQTKTNLPWKNGSKTVDYFVEVGTTPYGKYGLYKEMIPVGTGSRGRHSEIGAEIRLSNPEVFDSLELRQVVSRG*
Ga0098038_100356514	F015360	GGA	MTKAKMDYLWAPKDEKLVSSLLDSLGFTGVGESGRYPTGVKYDALVAICDVVASNEKTASLVASRTHQLQSERKATGKAPSVDSVVSALASGKMSESDLKKAMKKAGLIK*
Ga0098038_100356518	F019253	AGG	MNTDAVTKFNKYMTQHTDKVPLLSVQSTDDKRYHVLRDFLNSVFDDVEDNAWSVSANLGKFVDALSTMESKDINTLTRTVKKYEVKGTSSGVYGERTYGYDRSRVDRTLIRRRRAN*
Ga0098038_10035655	F031893	AGGAGG	MKFEIELNKYDIDQMNKNRYGHDDVITYGYMLDILHNIVDQIHDQQ*