Scaffold Ga0098038_1003029

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1003029
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7081
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005751	Metagenome / Metatranscriptome	391	Y
F031151	Metagenome	183	Y
F059457	Metagenome	134	Y
F089161	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100302910	F059457	GGAG	MEATKIGNTELYTARVLNMSVAQYYGVVKEYNELVVETRELNKKELEKNGDKAELNLYYSVRYNLNKLVLEKINGENNE*
Ga0098038_10030292	F031151	GAG	MIEHFEKFNVSGKGLLPLSFSHINEFAFYRERWALRRIFGYEFPSSAPAERGKAVESGLNMVLNGISVQDASEKMIAEFDANCLKITDPKVDDERANLVPLLELGASKFQEHAFQWNLIGYQKKVEVDIQGIPFIGYTDFQFEDKNSKEDFFIDLKTSKTNPLQMSTSHAMQQSIYNRATNARQMLWYLKTPTKTKAPEFTQLELSSYDHYMKICEHIVNVMGNYLKTVNSPDDVKNSLVPNPDNWIWKEETVLNARKEIWGY*
Ga0098038_10030293	F089161	AGGAG	MSDKYNLSDELNQSRELDQDQEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLENKKHLQEWVDKI*
Ga0098038_10030295	F005751	N/A	MDIYSIGFDPNKLSYQHEELGMRFADLDTAVELMKKEEKMIIAELTIYYSKKANYKNMTELNGLIYSDIKFKSYLDRYEKTLKQRNQSKIRFETFKAFRDDLRTKVVNERELAKHNL*