Scaffold Ga0098038_1002550

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1002550
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7742
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F004956	Metagenome / Metatranscriptome	417	Y
F005495	Metagenome / Metatranscriptome	399	Y
F042286	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100255011	F042286	GGGGG	MSGQFPTSPNFKSLNFKDNRPTLLNQTLSGRKQVRQIGA
Ga0098038_10025503	F005495	N/A	MLKWNGGSNTPNLNMKKYKILIDTMAGGSKVHAGDIVELPEHEGHALCGYGKAEVHTAKPKAKKEDRSVGLETSNTKAPKTRAKK*
Ga0098038_10025504	F001582	GAG	MPLESALDFNAYVDTTTGHGVTATFFEVQSSLWDLRQGLIDTWFDIDSGDAYSVNIIIDQEYFNIEGGTVPVAGYQPRAILKSSDVPYISQEDRLVVDAITTDKGNVLKPKTTFLVKTVEPDNTGLVSVVLEEQ*
Ga0098038_10025505	F002716	AGGAG	MSQFRLETELDMAGYLDINFGHGVSAVYTNSGNSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDVPNIAFGNTLDISAIKDTNGNILKAAQNYTVVNIQSDRTGFSALMLEEI*
Ga0098038_10025507	F004956	AGGAG	MKMISPDGKVSIKAHPSKVESLLNMGWKEEAVHSQDKIKSSSKKKSKDEVENGNT*