Scaffold Ga0098038_1002390

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1002390
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8014
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009991	Metagenome / Metatranscriptome	310	Y
F022908	Metagenome / Metatranscriptome	212	Y
F024812	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100239012	F022908	GAG	MPTHLDEAIKVILGPDSKLRDKTPRIYAMPKEEDMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIILQQPPFDKHEDQSEIFTLIRKPDERWWSGVKDMFYFMPWYTWWTNEKIMAQWPHFTRSTLRLHDVMEEVKPQHLIKCDDGLNDRVIKFAKEHGLLCYGNIPHEKALRHTKADIKQLEDTGVRQLRAWLRKNPDRQKQLDEYLEPDWQYWEQVEYQD*
Ga0098038_100239013	F024812	N/A	VDFVNAMTAETGDLSTGSATAGLEATRAVISRYINILSEGPLHESDKQKTYTVRTDSLGTLISAGTLQTDIRALNGAGNVTATISSATVTATDIAIDTANVVAP*
Ga0098038_10023905	F009991	N/A	MIYQLNSLRLGLVHEDNIYGKPTIFLVMGSQSADIESHLKRCNHLLDQKGINLIAVPFNNNGSEPGDNYEIVAHYENVLNIKFYVTEKIDTSHKFFEDFGVPAGDFTEYHFDAKTKFIKKV*