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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006735 Open in IMG/M |
| Scaffold ID | Ga0098038_1002265 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8239 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003196 | Metagenome / Metatranscriptome | 501 | Y |
| F018479 | Metagenome / Metatranscriptome | 235 | Y |
| F028814 | Metagenome / Metatranscriptome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0098038_10022653 | F028814 | GGA | MGILMMLKEGGSLGIDTIGNLPIDEDIDLLPDTGTVSLNVDLQLMLWSDTGFALQYLDVDEMLLLGA* |
| Ga0098038_10022656 | F018479 | AGGAGG | MSATIGDLIDRTYREYLEPMDDLTSYTTLGSTISASATTLNFNGALLSIEEEDAMDAGAIVEIGQELMICTDLNAVTNTLTVTRGARGTTAVQHLADSIIKIAPVFPRKNVFDAISDQIHNLYPTLFAVETVSVNAATGYTILGAHGTDQDNNNYLVAPLKAISQYTDFSAGSDSTGIQYRGVQVELIDLPNPFTYVDNAGTSRTKTYNNGPNVVHAVQTYNIASGHVVYITFKKKFLDVRDYDSDGDIEDTTLSQIGLETEYEPIIMTGVAAQLMSGRDIPTATADYISDQMGVTNFPVESASRIRNSLLAYQRALIQQARKDLRARYPEPVSINSISYG* |
| Ga0098038_10022657 | F003196 | AGG | MYKFNVKEVTIDVSANGTQSSSVNTDGMLLTAIVFPAAMTGTAITFDFSVDGTNFYDVVETNGTEVSYTVSAGNVVRVDPSGWAFASSGFIRLTSGSTEAADRDIKLIFRTA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |