Scaffold Ga0098038_1002176

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1002176
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8401
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F073646	Metagenome	120	Y
F087060	Metagenome	110	N
F088913	Metagenome	109	N
F099447	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100217614	F073646	GGA	MYQTEYLELAKELYDIYLANDKHPKRWLPIVELEKCKRGPGFRAKLKKRKGKFSELQPVFVDYVNTQNQYRSCNTPQQWSCKFDYWLQDEYEFTTEELNELQADRGGQIRRETSSEVIN*
Ga0098038_100217615	F099447	N/A	MPKRDANKIINHVFSDLIKWTYDDAIFQLTQIFNFTDEECEQLLKENDILSSSTKEVIMNPAPTFNATSPRDVKDLADNLWHARKHISDAKKLISATALTADDYLTQKDFQEAVVQRANLNFHFISITKYIDEMSEHTKGHIPPLR*
Ga0098038_100217616	F012584	N/A	MMKLKPTLPENTFELNTNSLPTSKDTDPWGKIMVFRKDVGWSCISLDSLITFFEDLKFTHWTFTPEIPNE*
Ga0098038_100217617	F016820	GAG	MNKKEFSYIVFSSSGDNAKEIVGVYKDLDGASYGARLALSTLFPKHGDKAEIIRCEVISSEEAQIEYEKTKPTDIFEKCEDGFCPMPTLKLEKNYND*
Ga0098038_100217618	F006793	N/A	MTNTRSNNEQLEERINYAADQLAKGKRAMDISKKLASKYNVSIQQARDYVRQAKPVLTQSISPNDRAFIFSKVMSCLEQDRLDARDQENLKEQTRSTGGMVKMVSLLTSIDQVGSWDSARQTEDDYLFKNFSEVAKKRKKRYGDLDSLDNTDIPF*
Ga0098038_100217620	F088913	N/A	MPSVSQPPKYKVNDRVKIRYVLKTSNRYVVINGKTVASQRRKGVIKEIILKENKCGAKIPHYQVLWDHQSQPCLISQHRIVLENEMSEM*
Ga0098038_10021764	F087060	N/A	MTKSQTKSNDTSAKQVLRNIIGSTQRTVVTGDAPKTKKFDPVADQDDRLMKMVDLSLAIKDKKNEYDDLRKSFENDLRAALDDSEENPKIRHSENNRVHVYLSKRRVYKYSEKLTAKRLKLEAQLADLKDDEAKEVRHGKATLTKQTLTVSFKS*