Scaffold Ga0098038_1001983

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001983
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8797
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F022555	Metagenome	214	Y
F026042	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10019831	F006867	GGAG	MLYGKDLAQSIQKRCKIQPGMLVKSTAGTTVSKVALVVRLSPACEFDRDYEGSEDHIFYICEPCDGTPAFSDYVTNMEQVS*
Ga0098038_100198314	F026042	GGGGG	VTFDVLKLLEQEGYIKGGEDNLVHAEKAFFAARVMKWIRGKAQTDPEFNLTAYLTMLMYYKTGMAELKFSEDGDNIFYKMINPDKEVQDLVDSLIKSSRKDATKKLIDKIEEDGEQTDDEDPEDS*
Ga0098038_10019834	F015346	GAG	MKHKLYNVGDLVANDHNGVLGIITRSNYWMTDEYLGDTVELVDVMFGSSVSKQYPVRYLEEL*
Ga0098038_10019835	F021674	AGGAG	MERETYNTRLKTNPEDIPIGSLLRVKKHCRKNVTIVHNGEYGILAPSINGKHITHDVLFPNGTRCIFMPLNWDVISYAK*
Ga0098038_10019836	F006383	GGA	MLNSTDKMWTVQQPGTLLRAKHSAKYGKLALVLEKAYAGPTPSNGYPPRQYVKIQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN*
Ga0098038_10019837	F022555	AGGAG	MAITPKFKPGQLVKYDHPANPLVGLVKSTQFARRRGNPVLVLVQWCNGRNTEEYIFQKDLKLVEEV*