Basic Information | |
---|---|
Taxon OID | 3300006735 Open in IMG/M |
Scaffold ID | Ga0098038_1001838 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9120 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (96.15%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007343 | Metagenome | 353 | Y |
F019151 | Metagenome | 231 | Y |
F024570 | Metagenome | 205 | Y |
F066845 | Metagenome | 126 | Y |
F095345 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098038_100183811 | F095345 | AGGA | MSDLRIIKERRFYDEHGTKKFALLEEGQTVKIDSHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGFEE* |
Ga0098038_100183814 | F019151 | AGGAG | MIVADERAKDGLELFDIDGTESFEMKNETLRMCADEDGSIWYSVRGLTIKDADGNTLFTLSWSENGVCGSLYDDELTVEIEEEF* |
Ga0098038_100183815 | F024570 | AGGA | MAYTAYEIRRTKETPTGKRHLVRCNRLGKWAITSWVGSTGSAMGSVECQGEYDYVIKKWKQLVGAESFEALRKLAVGE* |
Ga0098038_100183817 | F066845 | AGGAG | MMNNRQIAIAKHNASKKRFADIFTGCLAHGTLKQTQKKKKTFKLPKNK* |
Ga0098038_100183821 | F007343 | AGGA | MKISDLQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYKYWEVPAFAEGRAAYCKAKQRACDTWGCE* |
⦗Top⦘ |