Scaffold Ga0098038_1001838

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001838
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9120
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (96.15%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F066845	Metagenome	126	Y
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100183811	F095345	AGGA	MSDLRIIKERRFYDEHGTKKFALLEEGQTVKIDSHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGFEE*
Ga0098038_100183814	F019151	AGGAG	MIVADERAKDGLELFDIDGTESFEMKNETLRMCADEDGSIWYSVRGLTIKDADGNTLFTLSWSENGVCGSLYDDELTVEIEEEF*
Ga0098038_100183815	F024570	AGGA	MAYTAYEIRRTKETPTGKRHLVRCNRLGKWAITSWVGSTGSAMGSVECQGEYDYVIKKWKQLVGAESFEALRKLAVGE*
Ga0098038_100183817	F066845	AGGAG	MMNNRQIAIAKHNASKKRFADIFTGCLAHGTLKQTQKKKKTFKLPKNK*
Ga0098038_100183821	F007343	AGGA	MKISDLQPAAYPQSPSVEKPNSDAHALFTNDFNKNSFIEANGDVEIVWNERYKYWEVPAFAEGRAAYCKAKQRACDTWGCE*