Scaffold Ga0098038_1001744

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001744
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9403
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (59.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002565	Metagenome / Metatranscriptome	547	Y
F025409	Metagenome	202	N
F047109	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100174412	F047109	AGGA	MTNNRKDNDMKTYKVIGGYTVYEQYEINVEAKDDKEAIAKAEKIPVEKWDELQSQNSDCGFTIDDVWEDE*
Ga0098038_10017445	F002565	AGGA	MLKAIYFALHFMMIFLGVVLAIHFDFWIGVAIATTFTVKWFFMFPYHEGR*
Ga0098038_10017446	F025409	AGG	MTKVKTEKYEGYTIEVYEQKANVEYPLNDDDWDDLDPDCLGTHAYRVFNKENELIYEDKTHMWDIGACLENAKLDLDMDIKQQTK*