Scaffold Ga0098038_1001496

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001496
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10087
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007947	Metagenome / Metatranscriptome	342	Y
F031294	Metagenome	183	N
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100149610	F049286	AGGAGG	MPKYEVTRSYTVICVAKVEADTHYHAEEIACDSGDIHWKEYDGDYDDEVYVEEIEDA*
Ga0098038_100149611	F049286	AGGAG	MPKYEVTRSYTVVCVATVEADSPDHAEDIACNSGDIHWKEYEDDYNTQIYCSAIPDE*
Ga0098038_100149616	F003073	AGGAG	MPKKLKNMTDDERIAYWESEREKARIQRRNRIAKLSMDQRAAVIDVNKLLDRVLDIALYPDMGGIRMVSAFDLQELSDAIDTLQFQFNLKGE*
Ga0098038_10014965	F031294	GGAG	MRKFEMLDLFLIAMLMVGVFFCFAMLSLHGVGYMTWLSWTFFGCSAWCLVVGWFIVAWNMEQNK*
Ga0098038_10014968	F007947	AGGAG	MLNCNTILCIQNQMPDVGMDDMFIIGFLVVAVVVVVYLMIEAWKEN*