Scaffold Ga0098038_1001478

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1001478
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10164
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F005105	Metagenome / Metatranscriptome	412	Y
F012166	Metagenome	283	Y
F056146	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100147824	F056146	AGG	MYNTLLYIGLTLMAVGFVGWVVSICMERHYEVKLWELEQKRKAENE*
Ga0098038_100147825	F000999	AGG	MNRDTIQAGKIFQSTDFAVSWYAKKYNKVIFRIGNMSKDGCRVWESNGKKYMCFWDTVLERYTTCIDPMITYKRKVS*
Ga0098038_10014788	F012166	GAG	MAELANSGIFLERKLTPEQKLWKAVLSQGVYEACSKKAQALPLTFGEMRSALEWVDLSNGDFIQVCIYAGYDPAYIFRKAKGKVNAKNM*
Ga0098038_10014789	F005105	AGG	MRKICNACLGNGYRRIYKDTSEEEKIVIQCAACESSGEIEDEDFSYDYSGLDLNKLQ*