Scaffold Ga0098038_1000918

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1000918
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12807
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F013153	Metagenome	274	Y
F053286	Metagenome	141	Y
F105145	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100091812	F003091	GGAG	MTMRPMKPITKPGEGKERQKYITKELYLEERYQISAGLQGPKRLEGESFEDFKIRRKAENGLLKEYLRGVWVKKED*
Ga0098038_10009182	F053286	AGGAG	MNYQETLYGKQYLLGKDVYVDGKHKILNVPLLDLMDELGFIPEGEYSQIFTLSVVWYENDGEVMVHQIYNHDTGEILWEDKTNDEWTDNDEQLLDALLMYGNLQETIGEYYV*
Ga0098038_100091821	F013153	GGAG	LNKIIWIVLILTTLTVTCDDRIEEPNEANIIVTMLRVNRIEIQDNLWITPAPIWGHLESGDGVPVDRLVVHWWSNMYWDEDDSSGHYKLLPNRRNKAIWYDNFGNRDTMDVNVDTLRWTTDKVSMVDSLGYFYNTLTPVKVMQNKGSGSWMKLYWSIESTLIDSQEIFLMD*
Ga0098038_10009186	F105145	N/A	MTNKQLIDYIVDKFDGIILDDYDREVHSIEGKPYKITFDRSRVEWSCSCPAFTFRRRHKISKCKHIIEIQNKKFEKLTKGNK*