Scaffold Ga0098038_1000707

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1000707
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14508
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F004988	Metagenome / Metatranscriptome	416	Y
F009812	Metagenome	312	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100070711	F000720	GAGG	MTLIKDNTKVRRQIPNRMPSATFTLPIDGRRVVGILNYDITETGIVPMAFWVKLKPTDSYLDRELRASGKLISRCLQNNESLKDLVDTLSQDNVIGQMANYLHKNMEEIIMGKQPEKKQRELSTDPYAMKE*
Ga0098038_100070712	F030928	GGAG	MKEWLKTLEAYTSFLIMGFTIFICLIVIIVNCRYIVRLESTIETMWYEIEQVKETNISLFQFIEEHENDFD*
Ga0098038_100070713	F083388	AGGA	MQKRISNIEWVMERCNPEFKEVWARKLEQLLDRRVEKAYERMVENARSVH*
Ga0098038_100070714	F004988	N/A	MVKLVETICPRCNGNGYIVVLDKDAFSKEIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIVKWSGETLPEKGQ*
Ga0098038_100070715	F003020	GAGG	MPDISKFKSVSVSTETHTKLANLAQNKFEVPVSVQKIIEYLLKKELKKKNGKTR*
Ga0098038_10007079	F009812	GGTGG	MIMMIEEFEIEWIPEDTGAPYEVEDIFPDLPAHTLDKLCKEKFGHTNWARMGQMSPEDLLGNPHEFDYENGVIFFKNAHMV*