Scaffold Ga0098038_1000640

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1000640
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15429
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053550	Metagenome / Metatranscriptome	141	Y
F056918	Metagenome	137	Y
F074050	Metagenome / Metatranscriptome	120	Y
F077815	Metagenome / Metatranscriptome	117	Y
F092866	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100064014	F074050	N/A	MKRSYIKELVKEELQKIKNEAAGRAVSRGTVTDNTRLAMVLSSLGKRAKGSFQKRKVVSQVILKLAAALEITPNEVLRAYIDYKKDAKGEASTKVKKDD*
Ga0098038_100064015	F077815	GGA	MDGKDLKNRIKQIIREEVNQLIKEESYKFGTLADPKDMDPNDPMVKVSGFATLNRSSIRGQVVDRLSGALATAKDAAKGGPNSYQAYKQLQDLISDAGILYKLIGAELDIANQLESKRLKGGRRSIPIPKQ*
Ga0098038_100064024	F056918	GGAG	MKHLKVGDIVGAVFLGSSCECEVIEITDKKSKLYKLRMKSGTILPGVTWFKNLDAKQKKNKPWHIVKYLGHKEPKVIEKDSIQKADLDKAIAKQKKFLRGEIKD*
Ga0098038_10006404	F092866	N/A	MGFHKRYIDDEQIIDIYRNNGCQAVIDWYQKGVDAIILSGELSETVHTLLNILEVDKIRGFNRISEVISEASLLKGNKN*
Ga0098038_10006407	F053550	N/A	MTLYFQLKDQDRFNMKVTNKFQRKVLKRHPDASLTYTETGVRVMVGDTYLAEEFYLPETHDVEKAWEYAALACRTKQQFNRTHPMRMDLSDIESKINRINKRRGARHKRK*