Scaffold Ga0098038_1000579

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1000579
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16349
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050370	Metagenome / Metatranscriptome	145	N
F052566	Metagenome / Metatranscriptome	142	Y
F077246	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100057921	F052566	GGA	MLDKHVYIRKDGGETWCYGTIKEDSNFSVVCEDEYNDGIWAGDLDFYPENWDQVCEYLEEYYDPHIEQLETC*
Ga0098038_100057923	F050370	AGAAG	MNYIHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYNGVGHWNNEGTNTDGTTNSVQMREEVWIVRIVTDDPTFSGLNLIEAELFKRNEKCVMSTTQEISVRFNYA*
Ga0098038_100057928	F077246	AGG	MDLSNQALVVIPKSWNEIYDYINDQEHPAYSTVLALMVHNYTLHKFSEMGGYQFSEWKQEYLKDVKQD*