Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1000529 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1000529 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17042
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (37.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

17042

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (37.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F052892	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100052913	F025153	GGA	LIKLKDILEQSIGFQVPGTPKTKNIGRNTRQEFAKFFNNFEAGNTKTAISSYAEQIMNSDAPDDIKKNASEILNEMEKVAIDIQDELHTRQISDDEVAEKLFDYVNSDMDADDSIEFEQLLWYDNQIDTSIKSGMIENAVAIMGQLLQQLEFIRGFILQEFPEISPIGFKR*
Ga0098038_100052916	F020797	N/A	MKLEDILKSIPNQEVIKCNDGQWKYPGRITQIPSNRITMQPNPDTGEPQQHILLIIGDQSGEKQIGIPGGPNLFFPNDKSVTEYPIKRYK*
Ga0098038_100052925	F047319	N/A	MYNQGETVIVTERINKKEEKHSVGVIMKPFIHKKQTFYDVLLERRTALSYLNTARSSKQAFINKDLTTKLVESGNIESTIPFKSMLDNEQLPIIIA*
Ga0098038_100052926	F042580	N/A	MARPKLPKLEKLQKRVRKRYPGSICIQDSLGQYYIEWNEENLNDTFLLENADTEELAWEQASITAKHEQHINRTHPMKKLISEEQKNQNKERITRRIRKYD*
Ga0098038_100052931	F052892	N/A	MRPTNSMYILPTIEYQDKRFNIKRLVREDPNENIEYWKSIINHDVVLRKDGYLWFLIEISDAEIIEE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1000529

Overview

Ecosystem & Geography

Associated Families

Sequences