Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1000341 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1000341 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21348
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (79.31%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

21348

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (79.31%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N
F045425	Metagenome	153	N
F070658	Metagenome	123	N
F075427	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100034112	F045425	N/A	VADGTPYSARWTGPVLIPRGQDTTITVAVEHSGSAPTVSAVTFSLWDSGGTVLLDAVSASESGGTLSYTVTAATTSGKTLGQGFLLKFTATIGGDAHDFYNDAALTLARLYPPIGTTDLTNRYSRLAALQTTGASDLQKFITDAWTELSSRLYSEALPFWRMRTPSALRPWLTAQALVFALDDLALTLGDGGPYRDEARRIEQTLPRLYGQIRSRMDDGEDNTIGEQQQPASPVLVLSSGRLGRFTR*
Ga0098038_10003415	F075427	N/A	MCLRIDRLWGQQPGWFLSLERSVQVQLLAEHRLLTETPEQAKKNAQRAKRADFDRRMRQING*
Ga0098038_10003416	F038464	AGGA	MDTLTLSPLPDLQIRKPASWTALADLTVSWPTEPEDPTFRARLLRCSAAAIGLVIDDERLPLPSYRTASMDLVAYGESVIEVLIPRGVQLGEIIRGGRTVADWLTTTLPSEQEVSDTADFTGAGVSVI*
Ga0098038_10003418	F033250	AGGAGG	MDVKLSSTRQLSPVFESGGRLDLDVLRPLLEQHAASMVEDARDGGGGWPVDTGISRDAWQAEIDVSPTQLFVSLINEARQRGRGYAVYIHRPRSRRLVWTEVAERLNLSLIPALQADIAVTLVESMRG*
Ga0098038_10003419	F070658	AGG	MSVDLDIELRSVTRHLKRKHGEMRVLSAGEFVVLLAGAQDVLIQLRTGWPVVTGRSRAGWDVQAIQRPFIGYRVSNGVDYSQWVHRAGEGEDGPLWEQQMIIIRDRILPPIVERLNRTITETEQYSQPVQPPQRSLFLATPQQQTASVFSQVRRLRRLVRRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1000341

Overview

Ecosystem & Geography

Associated Families

Sequences