Scaffold Ga0098038

Basic Information
Taxon OID	3300006735 Open in IMG/M
Scaffold ID	Ga0098038_1000060 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006735 Open in IMG/M

Scaffold ID

Ga0098038_1000060 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45171
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (69.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

45171

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (69.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F015360	Metagenome / Metatranscriptome	255	Y
F019253	Metagenome / Metatranscriptome	231	Y
F031893	Metagenome	181	Y
F075990	Metagenome	118	Y
F076605	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_100006026	F075990	N/A	VKPNYYKVLWHNCNRCRTHYTSEEPHIKAYLCDECWKAIPHYTVKTTKNIPKKKGDINMKTIILYTIGNLLCLGVIAYYLWFN*
Ga0098038_100006038	F019253	N/A	MTQHTDKVPLLSVQSTDDKRFKVLRELLNSVFDDVEDNAWSVSVNLGKFVDALSTMEQKDIDTISRTVKKYQVKGTSSGISGERTYGYDRSRVDRKMIRRRRAN*
Ga0098038_100006040	F015360	N/A	MDYLWAPKDERLVSSLLDSLGFARVGVSQRYPTGVKYDCLVAICDVIGSNDKTASMVASRTHELQSKRKATGKAPSVDSVVSALASGKMSEADLKKAMKKAGLLK*
Ga0098038_100006041	F006773	N/A	MSQATQTKTNLPWKNGSKEVDYFVEIGTTPYGKYGLYKEMVPVGTGSRGRHMELAREIRLSNPEVFENLELRQIVSRG*
Ga0098038_100006047	F031893	AGGAGG	VKFEIELNKYDIDQMNKNRYGHDDVITYGYMLDILHNIVDQIHDQQ*
Ga0098038_100006049	F076605	N/A	MIVGVSLMNNQKYFVYRLAQQQEKTSYHFLDADFGSEATKEAVYYGITSDPQSRLSKHRPKKGQDISLIVMAEFDNVFEGLAHEANLVWDHVKKYGKEPKFQGMAGIGNKGYTYGGNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098038_1000060

Overview

Ecosystem & Geography

Associated Families

Sequences