Scaffold Ga0098073_1015430

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1015430
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1204
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041146	Metagenome / Metatranscriptome	160	Y
F042289	Metagenome / Metatranscriptome	158	N
F070017	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10154301	F041146	AGG	METIHLYQIDGGYTYWEAYSDYTNDYLFSLDDDDVGDYLAQNKDKDIRVYDQEPYNAMYHIHIEMDKWWGRDDYHVDDCPAIHDPREQLDYLCEGCQTFEKWSKNKVRGDYNKAAKGRQ
Ga0098073_10154303	F070017	AGG	MTCDFCDTPLSDERAEIYSHCPSDNCVVMWKRMRLEDFSLTLVPKQGFQIIYKDNEFLKVGGRSSGKIN*
Ga0098073_10154304	F042289	N/A	PASECPDEFLTRVGNANVTIWRNRLADYDGKLCFSFPYISWCGDMYVAPDEPMAVLVEETWEEAALDIEFDLMKKGLI*