Scaffold Ga0098073_1005867

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1005867
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2452
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F029405	Metagenome / Metatranscriptome	188	Y
F030408	Metagenome	185	Y
F045064	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10058671	F045064	GGAG	MTKDKSPLNFDKTIAGFNVTERGIQSYTKSFQLGPF
Ga0098073_10058673	F001165	N/A	MSNSNLPRIPDSLDMERLQAMQLVAKMKESADKYGIGFIGGFIAPNGEKFVMSNMDEEDSQALLPDDLK*
Ga0098073_10058674	F007026	N/A	MAYPEINWKKNEYHQLQEVVNLLKAIQERESKRHQMDEHLTPHTADVVLEVIGMLEDEIDYDPTPNEPGEPPSTLDEMHTAAWKEHQEMHR*
Ga0098073_10058675	F019817	N/A	MPAAAPVALTINQRNLYTYFLNHKKKHGDTPCFVPRLPAQSSRLEQYLQALIKLEMYGLIHVDRSSDNYTGWIMTDPKLIR*
Ga0098073_10058677	F029405	N/A	MKDFNFIDEQRNADFLDAMSDIAYEQEEAMRESEAFEWDGIEEISSAERNACDHYNERYVIND*
Ga0098073_10058678	F030408	N/A	MAFTVALVADRSGRYAHVWGVPRSWNHFVDQLEDAGCEVIEDQTEDWDGCTRDEVAEDCLTVHQLLHDTDFIPH*