Scaffold Ga0098073_1004938

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1004938
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2759
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F004722	Metagenome	426	Y
F006109	Metagenome	381	Y
F017122	Metagenome / Metatranscriptome	242	Y
F043896	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10049383	F004722	N/A	MSRPKTGRELVLEWLNREIRAAKTADLQRAAAFLQWARDVRKGCAKQRGGARVAQANAWRKRVDEDVRW*
Ga0098073_10049385	F006109	AGTAG	MTRYVVMVEDRWVTAVYDSGKGIGFTRSKEDASSWVTYERAVAAARTVAQSCHCDAAVHSVDEPAYPQSWK*
Ga0098073_10049386	F017122	N/A	MEVVPFQEQQDPELRLGEGRSRTSAVTAQLFELKIWLPGQGAMRDLVRAESLPQAIEFAQNRYPNCGVEVPATAAKKPKLARAKNGPRETARRRLKLVEKRNEPADR*
Ga0098073_10049387	F043896	GGAG	MSQQIADWARQSWGEVIVDQNRADLMDKLYFWDGRDKKDHPMHGTYTGLYLKYTAN*
Ga0098073_10049388	F003805	GAGG	MRPIEHTPESCFHKTAQDRWLVDLFNKQDYRGLLEAALVLNTLHQLEKTKAAWAIREAADNLAEQFGMDRDSA*