Scaffold Ga0098073_1004340

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1004340
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3015
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F015852	Metagenome / Metatranscriptome	251	Y
F032994	Metagenome	178	Y
F068776	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10043402	F068776	N/A	MNYYYYQDAEVREQIDELLQQNAKIQANLGTESTAEEREEAKRKWMELAKQIREIDPKFYRERIMAQHR*
Ga0098073_10043403	F015852	AGCAG	LGRDITIHLVKVYTPYLLAFLLGVIVAWQGCNSEAKTITKVVEKPVPTIEYVERWRTDTVRFVSKKVITRYDTIYSERVVTRLDTMLLVDTLRIVETWLSEVANYDTTVNDVRLTWSNYQNRTENLKVQLRKKPLGWALGVHGLVGLQSDFVESYTPLFGIGLQGTVKKTYISANYGYNGQHYVGVGVGRNIISR*
Ga0098073_10043405	F006492	AGG	MDAILEALASYGIAGIFLAVLVYYLNKLTDIHRDERKEWQDANNQHVDKFSEVISENTKALTEMRSELKENRCKM*
Ga0098073_10043406	F032994	AGGAG	MNSIINPPVRTYWITFDGEDKASVLGYGWTDPNQRTDTIHVWETTTDEALWLARLLEYGIVPDIDEQGNLVL*