Scaffold Ga0098073

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1001680 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006734 Open in IMG/M

Scaffold ID

Ga0098073_1001680 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6024
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (30.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6024

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (30.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F092935	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100168010	F013231	N/A	MINQRNYQTCKLIKNRVDLYLYEMAKLFTNIGIDSTVEEIQEAYRKEKEYIELIAELDPEKADRLRSSY*
Ga0098073_100168014	F092935	N/A	MKSTAEVKNNSPIHSLIIDRRVAFANLVRAYLRFNVSDALNIVVEKDGNISINGNYYKFDVSDYTGAAPNYIFFNPSSGRIVIEGNGVSKVYKVDVDLLDY*
Ga0098073_100168016	F016811	N/A	MSEEEKSEELKQGQTIFDIGVRLAWKKKRGNGYINMYLGTEDRPFQFVTRAKDIDAINRNPEMIAKMMAFNGLTGKSIYDFHISKEFYRKEISKSFAHKEEDYEKEFGK*
Ga0098073_100168018	F005010	GAG	MIRKRKHIREIQKYLNMLMIDQVNMTIQASRFGWTPEIQNQLSNSALLIRKYQRRLRLIKM*
Ga0098073_10016808	F008384	N/A	LKKNTRYDKAIIEREAILSAQQDKITEPLGEFILQRAIEIAGSAFVTDGNEELKQSLIDSAVMRTCEKFLHYYVGGKSAANLIISIIYSTMTNKIVSLNHSDIYGHNIKGYVICIEDGEKITRLKRYIKDSYLSQQL*
Ga0098073_10016809	F024348	N/A	MPLDQHYEELTSDEADFILDIYRVIDRMVLDGRPVTLVGMAYELDVNPQELSDYLPTIIQILNKVEEEYEVR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098073_1001680

Overview

Ecosystem & Geography

Associated Families

Sequences