Scaffold Ga0098073_1001073

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1001073
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8154
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002985	Metagenome / Metatranscriptome	515	Y
F013402	Metagenome / Metatranscriptome	271	Y
F020341	Metagenome	224	Y
F040073	Metagenome	162	Y
F042290	Metagenome / Metatranscriptome	158	Y
F055663	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100107315	F040073	N/A	MLQFEAGPEEMFWQEKMIRQINDCTSMDELKEIAVLLTKIATTRQIAIKGLVKDAMDLMQGQFSHQLPSQSQ*
Ga0098073_100107317	F013402	N/A	MSTQLQTELNAAQAAIYTRTNLGRAFQDFDDTDIGGIYLRSDDCIVVRRDGSEQAYNREVVKVAYTNHTHRLKDFFSYLGPNYRGPSIWHNNAYVLFKGWNYSHALGHLSSHAKLQAHWADKFIHVSEQQKLVHLLQSDQTDLGHLVAPDGMRLQDRPINLDGDMEGEQVPVMGEPWCSCGSYQRQLSNLSDFEAEITGFKPWCIHLSWFN
Ga0098073_10010732	F042290	N/A	MTLTYRGVKYDKQEQAAKDKAWWNLAHRPWLSLKYRNLCYFPYVTGGQIK*
Ga0098073_10010734	F055663	N/A	MEDFFNLKISQKQIVCPKHGTHKHHISSDIEGYEGNWCMLCWLESLGPSLPLVDIEIQ*
Ga0098073_10010736	F020341	N/A	MKGFNTTKQTTRSSSYWVASYTKDNEDEPLGIHKKVLSYAPGQDKESLMTKYCHSLMKLNPHVWEVLVHQGPSKIPDHGDQIVIRLSRERFKGCSQLT*
Ga0098073_10010739	F002985	N/A	MSYVIACWRWGTPHAITANKESNKFELIPLDSDVALNKIFSHPYRAGAQQILTWINDNDEDLSSKELQVCDKAQFRK*