Scaffold Ga0098073_1001035

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1001035
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8324
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_10010351	F010877	N/A	MTTKQLLIALTGTGLPKGELKREMFNFYNSMVGKSKYFPKSENPSTGCGSCIQRVKTNIWKWYHDDKTSPNYKGLMFTGK
Ga0098073_100103514	F031255	N/A	MIKYFNEVVAELQSKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGQSSPSVLTVWDNNRKRYTSLIPDNIVSVTTSGTKYVKTDEFLVEQL*
Ga0098073_100103518	F035552	N/A	MSIKDDLLLRADLDTLYGALGMLVEKCKEDDDLIKVLLHFEQFVEIHKTRTRDMVTYRDTIEKARNEYRSLKLKYDGTKEALNQTRDMLHKVMNQKMDENVDNQF*
Ga0098073_10010358	F026712	N/A	MKKYFTPSDSEQEALMDLVIRELRMRGQSMDNYNVQEVAYRQAISDGAMRTDNYFAL*