Scaffold Ga0098073_1000870

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000870
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9338
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010650	Metagenome / Metatranscriptome	301	Y
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F014505	Metagenome / Metatranscriptome	262	Y
F025860	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100087011	F025860	GAG	METNNIYQIIDDLSGFAEQVGSEWMKERLAMLEAHLAVLEINQSVKS*
Ga0098073_100087014	F012872	N/A	MDLHFEGNRLYYLEKEAELFKVLNYLSNELGKNEPMTQDQLWEVFHICSDTAAIYRHITDYFSTLDKLILDARITNGKLKQELYDMKKENERLQKIVNQHLDEF*
Ga0098073_100087015	F013704	N/A	MSFKRKMANGQRFEINGMEFICMETTIALQTRIDGEEPDIDVDGSYYIVRNTSTGGLHKIPFKRIIEKEKEIRWKI*
Ga0098073_100087018	F014505	AGGA	MDRIEKFYRKNFKRLTGFIKEYTDGSYEVASDIVQMVFLRLLEMESEGRTNFYEEDSLNFFYVYRACINTALKYQRAKKKINKVSLEDFDVVDQEMEYDQINAMEKMILKMEQEMGDLHWYDEKMMRIYMEGTSMNKIHRETDIGLTSIKNTIKNGKARIYEELREDWEDFQNGDYDQI*
Ga0098073_100087027	F010650	GAG	MKEMKQFLRIANARLRKVYPNKQQRSAWAAKMYSRWIERINAK*