Scaffold Ga0098073_1000864

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000864
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9357
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F015587	Metagenome	253	Y
F019817	Metagenome	227	Y
F103180	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100086413	F019817	N/A	MLTAKPPVGLRITQRNLYQYFLAHKKKYKNTPCYVPRLPMQNSRLDQYLQALVRLEEYGLISVDRSSDNYTGWIITDP*
Ga0098073_100086416	F001165	N/A	MTTPNTPRIPDSLDMERLQAMQLVAKMKESAEKHGIGFIGGFISPNGEKFVMTNMTDEDDINKLMPKDLK*
Ga0098073_100086418	F001120	N/A	MTKDKSPINFDKTIAGFNITENGIKSYTKSIKLGPFQLTLNARESGVRGSISIPGTGLSKRGIRIL*
Ga0098073_100086421	F001807	GGAGG	MTVLAIEDAFFTDNHVTVTAVVDEMRLLYRATRFEPEEWAPALCITTIQLDPEEPIPLDEDGFCSYLDHLDPDWQILDTSDEQ*
Ga0098073_100086422	F103180	N/A	MIGFSIEFKRWYFVLRGPKGRVYLATGFAKRMPVMTPTGTYTLEDCVGTWPGDEADQELLDTLKTTR*
Ga0098073_10008645	F015587	N/A	MTKLNIRKNIASALISAATAVDNAKVPTKASIGAGLHDIRCRAAALVMPNDMAFVLTPKNKI*
Ga0098073_10008646	F003687	N/A	MNYQAVEHLLTQDARLLARRDSPVIDQEIESARQAALDLYFQWQDGMKEFKDLMPFVAILQRKVDLNRDLLRWERKHEDQI*