Basic Information | |
---|---|
Taxon OID | 3300006734 Open in IMG/M |
Scaffold ID | Ga0098073_1000610 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 11598 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (29.17%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Gulf of Mexico | |||||||
Coordinates | Lat. (o) | 28.867 | Long. (o) | -90.467 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007306 | Metagenome | 353 | Y |
F043372 | Metagenome | 156 | N |
F056579 | Metagenome | 137 | N |
F058959 | Metagenome | 134 | N |
F071197 | Metagenome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098073_100061013 | F043372 | N/A | MKTLFERLRPEQRERLQKMGDEMPFMQDSLVKTLQRNTLLIHVPFGDVIDIVRYLGDGRHSIGDGITAIYDCFEDIDKTGDDPSLQSDHNAQTTNT* |
Ga0098073_10006102 | F071197 | N/A | MNQLAPLTADIVAAKQGQQMSSLNDDDLGAFLRDEVKKALNRLGRKQIDPDVLKIAVEDIANDLRTKYRILTIEEVSIAFREGARRNDEHLFSSRTLAQWLETYMKEIRIKAFNHSPKPEKALPQETFDREEFITKAFDRFNIGGGLYGAERLYHHLEQMGKIDMTTIEKWQALKDTIEKEMEDTANCISNPILRNAARKRMDELKAAKIDPTKAEEWIKVATMRHIVESYFRKCYLSKVSPV* |
Ga0098073_100061021 | F007306 | N/A | MWYIGTREEVEQYNQKVNAAKAYKGSITSNWANPRQHPDGSKWAIVANNSIEPQEESNLIFEVQLSDDWTPEVEL* |
Ga0098073_10006105 | F058959 | N/A | MIEIRQKAERKFCNIGGLWYIFRKLLFAREVEVLIYFPDDMKDAYMSKKRAYKYKPIVGWQGKGRSQDICFRIFQEGNVLETARTLEDNNKMHMNVREEKASASNDIPVKVYMMTRRAGEWLPILPLHPYPSNSFRYRVAIRRVK* |
Ga0098073_10006109 | F056579 | N/A | MSQPNTYEEVMANMVTEIEEGNESALQAFLSFRNIEKVAKDCMKQIEHLALEELSDHNGRLEQGDIVIEARSSAGRWKFTDDAHAALKQQLKDAEELRKQAHKLHLKGSEVIDPDTGEIVPPADYTPGKESIFISKARKS* |
⦗Top⦘ |