Scaffold Ga0098073_1000610

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000610
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11598
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (29.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007306	Metagenome	353	Y
F043372	Metagenome	156	N
F056579	Metagenome	137	N
F058959	Metagenome	134	N
F071197	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100061013	F043372	N/A	MKTLFERLRPEQRERLQKMGDEMPFMQDSLVKTLQRNTLLIHVPFGDVIDIVRYLGDGRHSIGDGITAIYDCFEDIDKTGDDPSLQSDHNAQTTNT*
Ga0098073_10006102	F071197	N/A	MNQLAPLTADIVAAKQGQQMSSLNDDDLGAFLRDEVKKALNRLGRKQIDPDVLKIAVEDIANDLRTKYRILTIEEVSIAFREGARRNDEHLFSSRTLAQWLETYMKEIRIKAFNHSPKPEKALPQETFDREEFITKAFDRFNIGGGLYGAERLYHHLEQMGKIDMTTIEKWQALKDTIEKEMEDTANCISNPILRNAARKRMDELKAAKIDPTKAEEWIKVATMRHIVESYFRKCYLSKVSPV*
Ga0098073_100061021	F007306	N/A	MWYIGTREEVEQYNQKVNAAKAYKGSITSNWANPRQHPDGSKWAIVANNSIEPQEESNLIFEVQLSDDWTPEVEL*
Ga0098073_10006105	F058959	N/A	MIEIRQKAERKFCNIGGLWYIFRKLLFAREVEVLIYFPDDMKDAYMSKKRAYKYKPIVGWQGKGRSQDICFRIFQEGNVLETARTLEDNNKMHMNVREEKASASNDIPVKVYMMTRRAGEWLPILPLHPYPSNSFRYRVAIRRVK*
Ga0098073_10006109	F056579	N/A	MSQPNTYEEVMANMVTEIEEGNESALQAFLSFRNIEKVAKDCMKQIEHLALEELSDHNGRLEQGDIVIEARSSAGRWKFTDDAHAALKQQLKDAEELRKQAHKLHLKGSEVIDPDTGEIVPPADYTPGKESIFISKARKS*