Scaffold Ga0098073_1000608

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000608
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11666
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004278	Metagenome	445	Y
F020160	Metagenome	225	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100060813	F067649	N/A	MDIHVSVGEWMQTLQSLMSNAADGDCFCLPTTMHLHAFLILKEDFFSHRDFKVLVKQEGIHDQ*
Ga0098073_100060814	F020160	N/A	MNRNPQSPMECRKRLAWTIACEQAVVTKEDAVAIYNRIMDDFNSIDKRNKYKKLESNKS*
Ga0098073_100060815	F004278	N/A	MSSFFSSLVKYFIDWLKRLWFESKLKARLDMIELQNRVESELELEKQNKPIYIEHPIDPVLQPGESAKLGGAIELKAPWYTDEPQPPKSDGMP*