Scaffold Ga0098073_1000358

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000358
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16698
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (62.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001190	Metagenome / Metatranscriptome	753	Y
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F018836	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100035810	F002721	N/A	MAKDHRLDLGRYITNPFNEQGRIRKNLDFDELFRAKPESGSFPWNPSRFTERDLTNRVMTRKRKLNPTLNFVQNSPFFDDNSEVNSDYELFEGLGRFNRPMDYDFNEGRALTQQRPENQPDFNPIWVEAYKLSPTIKPGKSAKNPMPRMRNPDPNGYLLAMAEKRAENETEGKMSIAQLLDNKGVMKSLPPKETEDEQGQTTADESTEEAK*
Ga0098073_100035817	F001190	N/A	MTVAGNTNDDYFDISKFEQLLERLESSKQRQQRQKSVEGRRDIFATGLAGMMSNF*
Ga0098073_100035818	F018836	GAG	MTATPTSITDTYNTDDWFDLDKYRQAAGVAYEFSKKKLEDTGAQERETIGKGATEQRTSAEQAQRFKQEDEARDYGQAQRAYRY*
Ga0098073_10003587	F001806	N/A	MDAGTRQKRVEALESIKNKAMEMAAKGADSGTVREFVKDAKVNLAYELPDEEAFTKAARATLAYKRKKG*