Scaffold Ga0098073_1000070

Overview

Basic Information

• Taxon OID: 3300006734
• Scaffold ID: Ga0098073_1000070
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41001
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (47.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F007505	Metagenome	350	Y
F022402	Metagenome / Metatranscriptome	214	Y
F024297	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100007028	F024297	AGTAG	MEVIQTFPNGTTIELGEDSHGNQVHRVCNPGGSMCRFVEPIHCAMVYAQQYEEMYPIKPES*
Ga0098073_100007054	F022402	N/A	MTNWLWRSIVATAGAILIISAAQWVSCRFYVLPTVWPWYAKYVGTPEGEKIDPSPMGCNDVDARTITVMMGVLTTLISLSRNAE*
Ga0098073_100007055	F007505	N/A	MQKIDTLKSALIAREEEILGYQINIDNYTLAIEKINKEYSDNPAIVEFRDRLSELLESHKTEQLKAIIIRDVIADQLKDING*
Ga0098073_100007067	F002215	N/A	VTPELIVAVLSGSAGAFAGLSRALSNFNKRIERRFETIESDLDNFQDRVIKEYVLKEDFLREMQAVHTKLDRILDHILNHPH*