Scaffold Ga0098073

Basic Information
Taxon OID	3300006734 Open in IMG/M
Scaffold ID	Ga0098073_1000068 Open in IMG/M
Source Dataset Name	Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006734 Open in IMG/M

Scaffold ID

Ga0098073_1000068 Open in IMG/M

Source Dataset Name

Marine viral communities from the Gulf of Mexico - 31_GoM_OMZ_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42444
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (50.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

42444

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (50.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	28.867	Long. (^o)	-90.467	Alt. (m)	Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gulf of Mexico

Coordinates

Lat. (^o)

28.867

Long. (^o)

-90.467

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000973	Metagenome / Metatranscriptome	817	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004130	Metagenome / Metatranscriptome	451	Y
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F031452	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098073_100006812	F031452	AGGCGG	MAEFGEIVDGTFFLSPEQVEVRKYGYSPIKASGIPTVYHAGDVVNLPYASGEISTMEALGLAWGSFSSGVVPE*
Ga0098073_100006821	F004130	N/A	MYHGSAAGFLDSFVQDEVKCRCLSEEDFGQPLDNQENDVPLYDMYNRGLVACEQGLERNPLTLEGGRPGVTGLIPSMEEGLAMGASPKPKALMIELEGPSEEEKEESLKRRGLRR*
Ga0098073_100006828	F000973	GAGG	MKYGIRKGLEDIAFELKGIKTVLSSLWHSRYDDGETDLLNPEAFADEYISTEECARRLSVSDQTIRNWIAAGKKNKDKGWKEGVHYVNITPDSGKRVTIRIPWNSLVQSFSKNKNLELTDLLPHNKYKSTQEMLE*
Ga0098073_100006833	F002876	N/A	MACKKSELISAINSFGAARATADGNLIGFSAQLIGQLIETLEFAPEEEVVEDTEVKEAVPA*
Ga0098073_100006845	F009805	N/A	MDVHIAVGEWMNSLMSRMTDAADGDCFYLPTLMHLHAYTLLKEGFFQDRNFKVEIKEQELA*
Ga0098073_100006847	F004278	N/A	MKRTLFKEIIDAIIRWWKRVWFEAKLKARLDMIELENRIESELEREKEQRPIYTEKSFDPKLQTGESQKLGGEMRLTAPWYDELESQRKDGKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098073_1000068

Overview

Ecosystem & Geography

Associated Families

Sequences