Scaffold Ga0098070_102323

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098070_102323

Scaffold Ga0098070_102323

Overview

Basic Information
Taxon OID	3300006726 Open in IMG/M
Scaffold ID	Ga0098070_102323 Open in IMG/M
Source Dataset Name	Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1950
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Caribbean Sea: Cariaco Basin
Coordinates	Lat. (^o)	10.847	Long. (^o)	-65.114	Alt. (m)		Depth (m)	148
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002697	Metagenome / Metatranscriptome	536	Y
F006422	Metagenome / Metatranscriptome	373	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098070_1023234	F002697	AGAAG	MTKQIKYFSWFMKSRNKFATCRGVDEYEYEDKWSGDFTTFKSKQWTDLKGNPCYNFWDIDSEHPRTAVNYSVRKA*
Ga0098070_1023235	F006422	AGG	MKLLIGLSGFIITMLGVILALHLDFTVGLLVTFLGVFMFWAMLPSTEQNERLRRYDR*

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