Scaffold Ga0098070_101227

Overview

Basic Information

• Taxon OID: 3300006726
• Scaffold ID: Ga0098070_101227
• Source Dataset Name: Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3421
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Caribbean Sea: Cariaco Basin
• Coordinates
  • Lat. (^o): 10.847
  • Long. (^o): -65.114
  • Depth (m): 148

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027819	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098070_1012272	F027819	N/A	MSDPKYNFGSPSKMKGLLAGEKATLKFLDLPEKIDTEWGVKYTVSILLLSHPSYPSLSSNGMKMQWQTGASVMVNNLVPLLNKKDKEFLKDYSELTWELEAMDDGSIWLTNA*