Scaffold Ga0031673_1197655

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0031673_1197655

Scaffold Ga0031673_1197655

Overview

Basic Information
Taxon OID	3300006711 Open in IMG/M
Scaffold ID	Ga0031673_1197655 Open in IMG/M
Source Dataset Name	Metatranscriptome of deep ocean microbial communities from Pacific Ocean - MP2255 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	898
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	West of El Salvador, Pacific Ocean
Coordinates	Lat. (^o)	10.09	Long. (^o)	-99.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052865	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0031673_11976552	F052865	AGAAG	MDLRGLGIVVLGLGLPSIATWMANSGVGSRVMSYVDMVPGMTTKYGKAVIAIGLTAGVSYLAANFGVISAAEALTANMIAMGLVSVGLLKTMSLPVGQGLVDNLPAANFGGLAGSASYGYIGNYHEGVGAEMLPAPQSQQLFGVRANIF*

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