NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101770_1035655

Scaffold Ga0101770_1035655


Overview

Basic Information
Taxon OID3300006674 Open in IMG/M
Scaffold IDGa0101770_1035655 Open in IMG/M
Source Dataset NameAnaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4730
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location NameFredrikstad, Norway
CoordinatesLat. (o)59.185359Long. (o)10.970104Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029085Metagenome / Metatranscriptome189N
F047639Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0101770_10356554F029085AGGAGMKDIKNDKLKIDELLEENISEQLENGSSDLVSLIAISELTNLEKLKVITRLKDEQVPLLTRLYMYAETFNVPFMKNLADNILQLQISIRGLGRKELVNIVRESTPTETKRGXFGTKDVFR
Ga0101770_10356555F047639AGGAGMRFLNKHKYLRVIKFNSDKSSTITYHLSSKFKPDFLINPDHIFIYNGYRTVIITDKSAETINPLDFNSKFNASDFKTAIESKLIKDTFSTLKPNLFDTTTIILILNLLMSFGILFLLLKGQGVL*

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