Scaffold Ga0101770_1029526

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1029526
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15874
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → Syntrophothermus → Syntrophothermus lipocalidus → Syntrophothermus lipocalidus DSM 12680 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042861	Metagenome	157	N
F072261	Metagenome / Metatranscriptome	121	N
F085589	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102952611	F085589	AGGA	MDIDRIERLISEFIEELEEACTSGNYHLLNAIDALTSALMELXALDFSTEVEDYFG*
Ga0101770_102952612	F072261	AGGAGG	MSNKQKACVRWLDGYPGFFEPAFYKKCYIQGIKAEAIAENERVITVSIYCTIWLENGCDINRWISYNLKSELSTVSLSLDEFYTLKPEHLITLVQQNYYPATAF*
Ga0101770_102952613	F042861	AGGAGG	MLRDLGNGKAILEFEDWERESRYNWMDFAELGDFIASYLVLNVEGMTDDDTINEFEALGYLTTPEDQIKKISLSALIDWNATVWIPVKLGELKSGEASAFDIYRTVWDYFEFVEIDKIETY*