Scaffold Ga0101770_1027839

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1027839
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18726
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013091	Metagenome / Metatranscriptome	274	Y
F014002	Metagenome / Metatranscriptome	266	Y
F027161	Metagenome / Metatranscriptome	195	Y
F030054	Metagenome / Metatranscriptome	186	Y
F031881	Metagenome / Metatranscriptome	181	Y
F033394	Metagenome / Metatranscriptome	177	N
F065696	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102783910	F027161	AGAAGG	MAMNEYIKLIIDNLDVSYLCSVMLLGYMITKSRLSTKIKIKTRWIILLIGIIVAIFYYFVIKIKLDVLFFSFVTAQFLNLYVAEFIIDYFIKKIKSLLEKS*
Ga0101770_102783911	F014002	N/A	MEFNFNISELVSIIALLVAIIGGYVNTKIQITRLMDENRNMLEKINKLDNKITVICKKIDRIRINLAKEGINGDE*
Ga0101770_102783915	F013091	AGGAGG	MICKLTNGISLKDCDTPGGVSESYFINIEDVDTLTVTDFQVSALTLKTDAKAYKIAFEPETSNFSSNAVGSQENSSAAFEQACEIKINKVDNNVLKQIDALTKGRHLVIIQKNDKTYEMYFHEGGAKFVANYSTGTALEDASGVTLTATHRQTSNMLLVSETVMEALPIEEETP*
Ga0101770_102783916	F031881	N/A	MKEFNFKVDRKISTMQIGKNKYKFAIDKSGATDINITQDKIEDVIYSIFDSSEFLDLVRIXTXXKGXQKIPKIYLQGVQGAGNGLVDSTGCGFEDTTEMVLSDVDIEVTKKRMGLELCLDELVNMVLEVHISDGARNENLDINEALLAYFAQVLRKNIQEYAFADGTDGLLTKILTDGTAPTISATDPLEILLALYENLPSGWQTSNEANPVIFINSAMMTAIRGQIFSSTAPITSSIEIVNNRFNLPLTNAVVVASPHMPISGNKMRAVAGISNYLFLATDLESDFDDVRVWYSNDNETIRFSSQVYLGTAVADITSFVKYIEL*
Ga0101770_102783918	F033394	N/A	MKSIYIYFKGEMADIYYKDNEKNLHTSINLYTKSEKIRDQFRVNLLERYWEKTEITDLDELKSIVKSSFVQVFTKYCEXFDKND*
Ga0101770_10278394	F065696	N/A	MFTKIIYMKKVIYILLILFLISCSKQQPIKHLAVREPSPLYYIDDLDTKLYIICSKYEALHLYDDLKXTLXQEIGITNYHKTAKHRMSIISHTNDIGTCQFQSATYDWLSTKYGINTNIIDPETSQITVMVLAFKDGRQNYWNGYKKYKNSIE*
Ga0101770_10278396	F030054	N/A	MNKREKKLFFVVLVLLAILLFNVESIKKKNQIINTNKKLISSYKERINSSNLVIDSLQKAIKQAKKTDTVIKIRYKQKIDSIYVYKYDDYISFYDTLLHTNLLKSDTFICFDSINIQKLTTKIVKCERDSXLLANCYXQNNLYANIINIQDSVNASLEDMYKQKVKKLKRQRNTFAGATLVEFLVILGLIXX*